augmentMars: Augment PlateData with MARS residuals

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Given a PlateData, normalize the selected features with a MARS model consisting of terms for membership to image/well centered ellipses and medpolish estimated row/column effects.

Usage

augmentMars(x, ...)

Arguments

x	The PlateData object of interest.
bscore	Whether to include B-scores (logical).
model	A (list) of regular expressions, specifying the features used for MARS modeling.
features	A (list) of regular expressions used for selecting the features to include.
drop	A (list) of regular expressions used for removing features from the previously compiled list.

Value

An augmented version of the input object.

Examples

data <- PlateData(PlateLocation("J101-2C"))
data <- augmentImageLocation(data)
data <- augmentCordinateFeatures(data, 1, NULL, FALSE, FALSE)
data <- augmentBscore(data)
data <- augmentMars(data)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.