findWells: Find WellLocations

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Find all wells on all plates using the following set of parameters:

Usage

findWells(pathogens = NULL, experiments = NULL, plates = NULL,
  well.rows = NULL, well.cols = NULL, well.names = NULL,
  well.types = NULL, contents = NULL, id.openBIS = NULL, id.infx = NULL,
  name = NULL, verbose = FALSE)

Arguments

pathogens	Narrow down the results by selecting pathogens (exact, matches, ignoring case).
experiments	Name of the experiment to be considered (regular expression, case insensitive).
plates	A vector of regular expressions for plates.
well.rows	All rows to be included (a vector of characters, exact match, case insensitive)
well.cols	The columns to be included (a vector of integers)
well.names	A vector of well names (e.g. B14), expecting strings, case insensitive matching.
well.types	A vector of regular expressions that is matched with the well.types column in well databases.
contents	This vector of strings/integers is matched against the three well database columns id.openBIS, id.infx and name via case insensitive regular expressions. In case it is specified, the next three parameters are ignored.
id.openBIS	A vector of regular expressions that is matched against the id.openBIS column.
id.infx	A vector of regular expressions that is matched against the id.infx column.
name	A vector of regular expressions that is matched against the name column.

Value

A list of WellLocation objects.

Examples

set1 <- findWells(contents="MTOR", experiments="brucella-du-k")
set2 <- findWells(contents=2475, experiments="brucella-au-k[1-3]")
set3 <- findWells(contents="SCRAMBLED", experiments="brucella-du-k")

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.