Files in nbenn/singleCellFeatures
Analyze single cell features stored in an openBIS instance

.gitignore
DESCRIPTION
NAMESPACE
R/Data.R R/DataLocation.R R/DataMeta.R R/augmentAggregate.R R/augmentBscore.R R/augmentCordinateFeatures.R R/augmentImageLocation.R R/augmentMars.R R/checkCompletenessFeature.R R/checkCompletenessImage.R R/checkCompletenessWell.R R/checkConsistency.R R/cleanData.R R/convertToPlateLocation.R R/convertToWellLocation.R R/extractCells.R R/extractFeatures.R R/extractImages.R R/extractWells.R R/findDataLocations.R R/getBarcode.R R/getCacheFilenameData.R R/getCacheFilenameMeta.R R/getFeatureNames.R R/getLocalPath.R R/getNoImgPerWell.R R/getOpenBisPath.R R/getPathogen.R R/getSingleCellData.R R/getWellIndex.R R/getWellName.R R/glmBootstrap.R R/makeFeatureCompatible.R R/meltData.R R/normalizeData.R R/prepareDataforGlm.R R/rebuildCache.R R/saveToCache.R R/utilDatabases.R R/utilLocalData.R R/utilPackage.R R/utilPigz.R R/visualizePlateData.R R/zzz.R
all.sublime-project
data/featureDatabase.rda
data/plateDatabase.rda
data/wellDatabaseAdeno.rda
data/wellDatabaseBartonella.rda
data/wellDatabaseBrucella.rda
data/wellDatabaseListeria.rda
data/wellDatabaseMock.rda
data/wellDatabaseRhino.rda
data/wellDatabaseSalmonella.rda
data/wellDatabaseShigella.rda
data/wellDatabaseVaccinia.rda
man/ImageData.Rd man/MatData.Rd man/PlateAggregate.Rd man/PlateData.Rd man/PlateLocation.Rd man/PlateMetadata.Rd man/WellData.Rd man/WellLocation.Rd man/WellMetadata.Rd man/analyzeSeparation.Rd man/augmentAggregate.Rd man/augmentBscore.Rd man/augmentCordinateFeatures.Rd man/augmentImageLocation.Rd man/augmentMars.Rd man/checkCompletenessFeature.Rd man/checkCompletenessImage.Rd man/checkCompletenessWell.Rd man/checkConsistency.Rd man/cleanData.Rd man/compareModeltoTruth.Rd man/configGet.Rd man/configInit.Rd man/configPathGet.Rd man/configPathSet.Rd man/configSet.Rd man/convertToPlateLocation.Rd man/convertToWellLocation.Rd man/deleteAllMetadataCaches.Rd man/deleteAllWellCaches.Rd man/extractCells.Rd man/extractFeatures.Rd man/extractImages.Rd man/extractWells.Rd man/findPlates.Rd man/findWells.Rd man/getAllLocalPlates.Rd man/getBarcode.Rd man/getCacheFilenameData.Rd man/getCacheFilenameMeta.Rd man/getFeatureNames.Rd man/getLocalPath.Rd man/getNoImgPerWell.Rd man/getNumCores.Rd man/getOpenBisPath.Rd man/getPathogen.Rd man/getSingleCellData.Rd man/getWellIndex1D.Rd man/getWellIndex2D.Rd man/getWellName.Rd man/glmBootstrapStability.Rd man/makeFeatureCompatible.Rd man/makeRankFull.Rd man/meltData.Rd man/moveFeatures.Rd man/normalizeData.Rd man/normalizeMoltenData.Rd man/plateBoxplot.Rd man/plateHeatmap.Rd man/prepareDataforGlm.Rd man/processSingleCellDataPlate.Rd man/readRDSMC.Rd man/rebuildAllMatDataCaches.Rd man/rebuildCache.Rd man/reloadSingleCellFeatures.Rd man/saveRDSMC.Rd man/saveToCache.Rd man/size.Rd man/updateDatabaseFeatures.Rd man/updateDatabasePlate.Rd man/updateDatabaseWells.Rd man/wellDatabaseCoverage.Rd readme.md vignettes/1-1_location_bruc-du.Rmd vignettes/1-1_location_bruc-du.pdf vignettes/1-2_ellipse_bruc-salm.Rmd vignettes/1-2_ellipse_bruc-salm.pdf vignettes/1-3_augmentation-features.Rmd vignettes/1-3_augmentation-features.pdf vignettes/2-1_glm-routines.Rmd vignettes/2-1_glm-routines.pdf vignettes/2-2_perfect-sep1-glm.Rmd vignettes/2-2_perfect-sep1-glm.pdf vignettes/2-3_perfect-sep2_brucella.Rmd vignettes/2-5_stability-glmnet.Rmd vignettes/2-6_stability_aggreggate.Rmd vignettes/3-1-normalization-glm.Rmd vignettes/3-2_normalized-stability.Rmd vignettes/3-3_z-scored-stability.Rmd
nbenn/singleCellFeatures documentation built on May 23, 2017, 11:31 a.m.