updateDatabaseWells: Generate the wellDatabasePathogen objects

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

For each specified pathogen, generates the corresponding wellDatabasePathogen object (holding well type, target gene ID and name for each well) using genome aggregate files, as well as a kinome aggregate file which contains additional information of control types which are not currently available for genome plates.

Usage

updateDatabaseWells(pathogens = NULL)

Arguments

pathogens

An optional list of pathogen names to have their corresponding database updated. If not specified, all pathogens are updated.

Value

NULL, invisibly. The updated plateDatabase object for each of the specified pathogens is saved to the /data folder. For the new files to be available, the package has to be reloaded.

Examples

updateDatabaseWells(c("adeno", "brucella"))
# using the wellDatabase{Pathogen} objects
data(wellDatabaseAdeno)
str(well.database.adeno)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.