cleanData: Remove some bad image data

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Given a PlateData/WellData object, remove all images where the cell count does not lie within the 0.05 and 0.95 quantiles.

Usage

cleanData(x, ...)

Arguments

x	The PlateData/WellData object of interest.
quants	A string for choosing between only applying lower, upper, both one none of the quantiles for cleaning up the data.
infected	A string for choosing whether to discard infected or uninfected cells.

Value

A cleaned up version of the input object.

Examples

data <- PlateData(PlateLocation("J101-2C"))
cleaned <- cleanData(data)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.