processSingleCellDataPlate: Read all single cell features for wells/a plate

In nbenn/singleCellFeatures: Analyze single cell features stored in an openBIS instance

Description

Read all available single cell feature data for multiple wells and/or the whole plate.

Usage

processSingleCellDataPlate(locations, select = NULL, drop = NULL,
  images = NULL)

Arguments

locations	A list of PlateLocation/WellLocation objects for which the data is to be returned. They all have to lie on the same plate.
select	A vector of strings that are matched with features to be kept.
drop	A vector of strings that are matched with features to be dropped.
images	A vector of image indices (1:9) indicating which images to return for each well.

Value

A list with well/plate data

Examples

plate <- PlateLocation("J101-2C")
well1 <- WellLocation("J101-2C", "A", 24)
well2 <- WellLocation("J101-2C", "B", 12)
well3 <- WellLocation("J101-2C", "P", 24)

locations <- list(well1, well2, well3, plate)

data <- processSingleCellDataPlate(locations)

nbenn/singleCellFeatures documentation built on May 23, 2019, 12:24 p.m.