API for neurogenomics/MungeSumstats
Standardise summary statistics from GWAS
| Global functions | |
|---|---|
| .get_ensembl_chain_remote | Source code |
| .get_ucsc_chain_remote | Source code |
| .onLoad | Source code |
| DF_to_dt | Man page Source code |
| add_col | Source code |
| api_query | Man page Source code |
| axel | Man page Source code |
| check_access_token | Man page Source code |
| check_allele_flip | Man page Source code |
| check_allele_merge | Man page Source code |
| check_bi_allelic | Man page Source code |
| check_bp_range | Man page Source code |
| check_chr | Man page Source code |
| check_col_order | Man page Source code |
| check_drop_indels | Man page Source code |
| check_dup_bp | Man page Source code |
| check_dup_col | Man page Source code |
| check_dup_row | Man page Source code |
| check_dup_snp | Man page Source code |
| check_effect_columns_nonzero | Man page Source code |
| check_empty_cols | Man page Source code |
| check_four_step_col | Man page Source code |
| check_frq | Man page Source code |
| check_frq_maf | Man page Source code |
| check_info_score | Man page Source code |
| check_info_score_log | Source code |
| check_ldsc_format | Man page Source code |
| check_miss_data | Man page Source code |
| check_multi_gwas | Man page Source code |
| check_multi_rs_snp | Man page Source code |
| check_n_int | Man page Source code |
| check_n_num | Man page Source code |
| check_no_allele | Man page Source code |
| check_no_chr_bp | Man page Source code |
| check_no_rs_snp | Man page Source code |
| check_no_snp | Man page Source code |
| check_numeric | Man page Source code |
| check_on_ref_genome | Man page Source code |
| check_pos_se | Man page Source code |
| check_range_p_val | Man page Source code |
| check_row_snp | Man page Source code |
| check_save_path | Man page Source code |
| check_signed_col | Man page Source code |
| check_small_p_val | Man page Source code |
| check_strand_ambiguous | Man page Source code |
| check_tabular | Man page Source code |
| check_two_step_col | Man page Source code |
| check_vcf | Man page Source code |
| check_vital_col | Man page Source code |
| check_zscore | Man page Source code |
| column_dictionary | Man page Source code |
| compute_nsize | Man page Source code |
| compute_sample_size | Man page Source code |
| compute_sample_size_n | Man page Source code |
| compute_sample_size_neff | Man page Source code |
| convert_sumstats | Man page Source code |
| download_vcf | Man page Source code |
| downloader | Man page Source code |
| drop_duplicate_cols | Man page Source code |
| drop_duplicate_rows | Man page Source code |
| find_sumstats | Man page Source code |
| format_sumstats | Man page Source code |
| formatted_example | Man page Source code |
| get_access_token | Man page Source code |
| get_chain_file | Man page Source code |
| get_eff_frq_allele_combns | Man page Source code |
| get_genome_build | Man page Source code |
| get_genome_builds | Man page Source code |
| get_query_content | Man page Source code |
| get_unique_name_log_file | Man page Source code |
| get_vcf_sample_ids | Man page Source code |
| granges_style | Source code |
| granges_to_dt | Man page Source code |
| gwasinfo | Man page Source code |
| hg19ToHg38 | Man page |
| hg38ToHg19 | Man page |
| ieu-a-298 | Man page |
| import_sumstats | Man page Source code |
| index_tabular | Man page Source code |
| index_vcf | Man page Source code |
| infer_effect_column | Man page Source code |
| is_tabix | Man page Source code |
| legacy_ids | Man page Source code |
| liftover | Man page Source code |
| list_sumstats | Man page Source code |
| load_ref_genome_data | Man page Source code |
| load_snp_loc_data | Man page Source code |
| logs_example | Man page Source code |
| make_allele_upper | Man page Source code |
| message_parallel | Man page Source code |
| messager | Man page Source code |
| parse_dropped_INFO | Man page Source code |
| parse_dropped_chrom | Man page Source code |
| parse_dropped_duplicates | Man page Source code |
| parse_dropped_nonA1A2 | Man page Source code |
| parse_dropped_nonBiallelic | Man page Source code |
| parse_dropped_nonRef | Man page Source code |
| parse_flipped | Man page Source code |
| parse_genome_build | Man page Source code |
| parse_idStandard | Man page Source code |
| parse_logs | Man page Source code |
| parse_pval_large | Man page Source code |
| parse_pval_neg | Man page Source code |
| parse_pval_small | Man page Source code |
| parse_report | Man page Source code |
| parse_snps_freq_05 | Man page Source code |
| parse_snps_not_formatted | Man page Source code |
| parse_time | Man page Source code |
| preview_sumstats | Man page Source code |
| raw_ALSvcf | Man page |
| raw_eduAttainOkbay | Man page |
| read_header | Man page Source code |
| read_log_pval | Man page Source code |
| read_sumstats | Man page Source code |
| read_vcf | Man page Source code |
| read_vcf_genome | Man page Source code |
| read_vcf_info | Man page Source code |
| read_vcf_markername | Man page Source code |
| read_vcf_parallel | Man page Source code |
| register_cores | Man page Source code |
| remove_empty_cols | Man page Source code |
| report_summary | Man page Source code |
| select_api | Man page Source code |
| select_vcf_fields | Man page Source code |
| sort_coord_genomicranges | Man page Source code |
| sort_coords | Man page Source code |
| sort_coords_datatable | Man page Source code |
| standardise_header | Man page |
| standardise_sumstats_column_headers_crossplatform | Source code |
| sumstatsColHeaders | Man page |
| supported_suffixes | Man page Source code |
| to_granges | Man page Source code |
| to_vranges | Man page Source code |
| unlist_dt | Man page Source code |
| validate_parameters | Man page Source code |
| vcf2df | Man page Source code |
| write_sumstats | Man page Source code |
