Man pages for ningb/diffreg
Differential Regulation Analysis of miRNAs
| AssignTargetCluster | Try to find optimal cluster number fro fuzzy k meansand make... |
| BuildCorList | Generate a list of correlation matrices for later analysis |
| BuildTargetMat | Generate a binarized target matrix |
| default.pal | Generate a vector of colors to use |
| dot-CalcGseaStat | Calculating random walking score |
| dot-Calc_NES_bkgd | Calculating background ES distribution for normalizing dES |
| dot-Diff_by_Remove | Remove each gene in the gs and see what is the changes in the... |
| dot-diffreg_ad | Run multiple-group differential enrichment using AD test |
| dot-diffreg_ks | Run two-group differential enrichment using KS test #' |
| Find_Target_Max_dES | Do backward random search to find set of targets that... |
| get_condition_exp | Calculate IQR and Q1 per bin x bin; Calculate expression mean... |
| GetLE | Generate a list of LE genes to be prioritized |
| normalize_correlation | Main function to remove mean-correlation relationship between... |
| Pairwise_postpoc | Do post-hoc pair-wise ks tests for the significant diff-reg... |
| Plot_enrichment | Do post-hoc pair-wise ks tests for the significant diff-reg... |
| plot_IQR_condition_exp_Corplot | Plot heatmap shwoing the Q1 and IQR of correlation... |
| plot_signal_condition_exp | Plot density plot showing signal (most negative correlation)... |
| Run_diffreg | Given a list of correlation matrcies, return the SpQN... |
| RunGroupSpQN | Given a list of correlation matrcies, return the SpQN... |
| Run_LINE | Given a list of correlation matrcies, return the SpQN... |
| Run_permutation | Given a diff-reg results, do permutation on group label |
| selectK | Try to find optimal cluster number fro fuzzy k meansand make... |
| sim.data | Simulated differential regulated data |
