Run_LINE: Given a list of correlation matrcies, return the SpQN...

In ningb/diffreg: Differential Regulation Analysis of miRNAs

Given a list of correlation matrcies, return the SpQN normalized matrices

Description

Given a list of correlation matrcies, return the SpQN normalized matrices

Usage

Run_LINE(
  le.gene,
  dim = 5,
  edge.sign = c("Negative", "Positive", "Both"),
  do.dim.reduction = TRUE
)

Arguments

le.gene	A list of correlation matrices with miRNA on columns and mRNA on rows
dim	An integer indicating number embedded features returned from LINE
edge.sign	An character for edge list weight; if negative, the reverse will be use
do.dim.reduction	A logical variable, whether to return dimension reduction results

Value

A matrix of graph embedding features for all the leading edge genes

ningb/diffreg documentation built on Jan. 20, 2025, 4:10 p.m.