AssignTargetCluster: Try to find optimal cluster number fro fuzzy k meansand make...

In ningb/diffreg: Differential Regulation Analysis of miRNAs

Try to find optimal cluster number fro fuzzy k meansand make plots for k selection

Description

Try to find optimal cluster number fro fuzzy k meansand make plots for k selection

Usage

AssignTargetCluster(
  normalize_matrix,
  select.k = 7,
  group.label,
  p.cutoff = 0.05
)

Arguments

normalize_matrix	A matrix from Run_LINE()
select.k	A numeric for k numbers to use
group.label	A factor vector subtype label for the samples
p.cutoff	A numeric variable indicating the p-value cutoff when assigning clusters to groups

Value

A list in which GeneList shows targets genes to each group, Label stores the group assigned to each cluster

ningb/diffreg documentation built on Jan. 20, 2025, 4:10 p.m.