GetLE: Generate a list of LE genes to be prioritized

In ningb/diffreg: Differential Regulation Analysis of miRNAs

Generate a list of LE genes to be prioritized

Description

Generate a list of LE genes to be prioritized

Usage

GetLE(
  cor.list,
  target.mat,
  miR,
  direction = c("Negative", "Positive"),
  alpha = 1,
  with.weight = TRUE
)

Arguments

cor.list	A list of correlation matrices with miRNA on columns and mRNA on rows
target.mat	A binary matrix indicating target with miRNA on columns and mRNA on rows
miR	miRNA to plot
direction	A character string specifying the direction of enrichment, must be "Negative", "Positive" or "Both"
alpha	Weight for running AD/KS test. Default is 1
with.weight	Logic of whether to return weights as well

Value

An list of leading edge genes for each group

ningb/diffreg documentation built on Jan. 20, 2025, 4:10 p.m.