ms_subsetting: ms_subsetting

In nkdailingyun/mineCETSA: Processing and Visualization of Proteome-wide MS-CETSA data

Description

Function to parse data against a list to subset the data

Usage

ms_subsetting(
  data,
  hitidlist,
  isfile = TRUE,
  pfdatabase = FALSE,
  allisoform = TRUE,
  revsel = FALSE
)

Arguments

data	dataset to be subsetted
hitidlist	a list of hit UniprotID to parse against the dataset, which could be a vector of IDs or a txt file, see below
isfile	whether the provided hitidlist is in a txt file under column name "id", default set to TRUE
pfdatabase	whether the data is a malaria dataset, default set to FALSE
allisoform	whether to retrieve other isoforms of the same parental Uniprot ID, default set to TRUE
revsel	short for reverse selection, when set to TRUE, the output is the dataset after removing the targets, default set to FALSE

Value

a dataframe

Examples

## Not run: 
IITDRdata_subset <- ms_subsetting(ITDRdata_f[[1]], hitidlist="hit_list.txt", isfile=TRUE)
ITDRdata_subset <- ms_subsetting(ITDRdata_f[[1]], hitidlist=c("P00000", "P12345-6"), isfile=FALSE)

## End(Not run)

nkdailingyun/mineCETSA documentation built on Feb. 27, 2021, 8:26 p.m.