clusterAssignment: Cluster analysis results

In nlhuong/vistimeseq: Analysis for short time-series data

Description

Getter methods for clusterAssignment slot of a TimeSeriesExperiment object. The slot is a list with with elements named: 'settings', 'hclust', 'cluster_map', 'clust_centroids' storing results from running clusterTimeSeries function.

Usage

clusterAssignment(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
clusterAssignment(object, name = NULL)

clusterMap(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
clusterMap(object)

Arguments

object	a TimeSeriesExperiment object.
...	argiments to other functions.
name	one of elements of 'clusterAssignment' slot: 'settings', 'hclust', 'cluster_map', 'clust_centroids'. If NULL, all elements are returned.

Value

a data.frame

Examples

data("endoderm_small")
endoderm_small <- clusterTimeSeries(endoderm_small)
clusterAssignment(endoderm_small, name = 'settings')
head(clusterAssignment(endoderm_small, name = 'final_cluster_map'))
head(clusterAssignment(endoderm_small, name = 'clust_centroids'))

nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.