collapsed-data: Collapsed data.

In nlhuong/vistimeseq: Analysis for short time-series data

Description

Assay and colData collapsed over replicates. The values can be computed with set with collapseReplicates function.

Usage

assayCollapsed(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
assayCollapsed(object)

assayCollapsed(object, ...) <- value

## S4 replacement method for signature 'TimeSeriesExperiment'
assayCollapsed(object) <- value

colDataCollapsed(object, ...)

## S4 method for signature 'TimeSeriesExperiment'
colDataCollapsed(object)

colDataCollapsed(object, ...) <- value

## S4 replacement method for signature 'TimeSeriesExperiment'
colDataCollapsed(object) <- value

Arguments

object	a TimeSeriesExperiment object.
...	argiments to other functions.
value	a numerical matrix

Value

a DataFrame

Examples

data("endoderm_small")
endoderm_small <- collapseReplicates(endoderm_small)
head(assayCollapsed(endoderm_small))

data("endoderm_small")
endoderm_small <- collapseReplicates(endoderm_small)
head(colDataCollapsed(endoderm_small))

nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.