normalizeData: Normalize Data

Description Usage Arguments Value Examples

View source: R/utils.R

Description

Normalize data the assay data.

Usage

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normalizeData(
  object,
  sample.norm.method = "scale_common_factor",
  column.scale.factor = 1e+06
)

Arguments

object

A TimeSeriesExperiment object or a data matrix/data frame.

sample.norm.method

Method for sample normalization. Currently supports only scaling to a common factor, "scale_common_factor" which with column.scale.factor = 1e+06 is equivalent to CPM normalization.

column.scale.factor

Sets the scale factor for sample-level normalization

Value

Returns TimeSeriesExperiment object after normalization. Normalized data is stored data slot.

Examples

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data("endoderm_small")
names(assays(endoderm_small))
endoderm_small <- normalizeData(endoderm_small)
assays(endoderm_small)$norm[1:10, 1:6]

nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.