plotTimeSeriesPCA: Overlay (time) series over PCA grid

Description Usage Arguments Value Examples

View source: R/plots.R

Description

PCA plot for data features, with time-series levels overlayed on top.

Usage

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plotTimeSeriesPCA(
  object,
  axis = c(1, 2),
  m = 20,
  n = 20,
  group.highlight = NULL,
  linecol = NULL,
  ...
)

Arguments

object

A TimeSeriesExperiment object.

axis

An integer vector indicating principal components to use for plotting, by default 1:2.

m

a number of tiles in a grid in the horizontal direction.

n

a number of tiles in a grid in the vertical direction.

group.highlight

An optional character string indicating the group subset for which the time-course trends should be plotted. By default all time-course trends are plotted for all groups.

linecol

a vector indicating the color of the gene profile trend line, different for each group.

...

other parameters for the line plots.

Value

None

Examples

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nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.