plotHeatmap: Plot a heatmap

In nlhuong/vistimeseq: Analysis for short time-series data

Description

Generates a heatmap of expression data.

Usage

plotHeatmap(
  object,
  num.feat = 200,
  scale = TRUE,
  feat_desc = "feature",
  sample_desc = "sample"
)

Arguments

object	A TimeSeriesExperiment object
num.feat	Number of top most features to use.
scale	Whether to scale the data (by features) before plotting.
feat_desc	One of the column names from feature_data(object) to describe the features.
sample_desc	ne of the column names from sample_data(object) to describe the samples.

Value

Returns a ggplot2 objet.

Examples

data("endoderm_small")
endoderm_small <- normalizeData(endoderm_small)
## Not run: 
    plotHeatmap(endoderm_small)

## End(Not run)

nlhuong/vistimeseq documentation built on Sept. 4, 2021, 2:41 a.m.