Man pages for nspope/r2vcftools
An R interface for vcftools
| Chrom | Extract SNP ids and positions |
| Clean | Clean unused temporary VCF files |
| Copy | Copy vcfLink object |
| Filter | Filter VCF files |
| Fstats | Fst calculation from VCF file |
| Geno | Convert VCF to genotype matrix |
| GenotypeMatrix | Convert VCF to genotype matrix and return |
| Lfmm | Convert VCF to LFMM format |
| LfmmEnv | Create environmenal variable file for LFMM |
| Linkage | Calculate linkage disequillibrium between loci |
| LoadMeta | Attach metadata to vcfLink object |
| Plink | Convert VCF to Plink |
| Query | Query attributes of a VCF file |
| Relatedness | Relatedness calculation from VCF file |
| Save | Save vcfLink object |
| Subset | Subset VCF files |
| TajimaD | Tajima's D |
| UpdateLink | Update link to temporary VCF |
| vcfLink | Create a vcfLink object |
| vcfLink-class | An S4 class containing a link to a VCF file which vcftools... |
