vcfLink-class: An S4 class containing a link to a VCF file which vcftools...
In nspope/r2vcftools: An R interface for vcftools
Description
An S4 class containing a link to a VCF file which vcftools interacts with.
Slots
vcf_pathThe path to the original VCF file
vcf_scratchThe path to the temporary (working) VCF file
meta_pathThe path to a csv file containing metadata describing the samples
sample_idA character vector containing the names of samples
metaA data frame containing metadata describing the samples
site_idA character vector containing the names of SNPs
nspope/r2vcftools documentation built on Oct. 10, 2019, 2:06 a.m.
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Description
An S4 class containing a link to a VCF file which vcftools interacts with.
Slots
vcf_pathThe path to the original VCF file
vcf_scratchThe path to the temporary (working) VCF file
meta_pathThe path to a csv file containing metadata describing the samples
sample_idA character vector containing the names of samples
metaA data frame containing metadata describing the samples
site_idA character vector containing the names of SNPs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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