Fstats: Fst calculation from VCF file

In nspope/r2vcftools: An R interface for vcftools

Description

Given a "vcfLink" object and a list of population IDs, returns a data frame containing pairwise Fst

Usage

Fstats(object, ...)

## S4 method for signature 'vcfLink'
Fstats(object, by, mean_Fst = TRUE)

Arguments

object	an object of class "vcfLink"
by	a vector containing population assignments for each sample
mean_Fst	return an estimate of Fst averaged over loci, or separate Fst values for each locus?

nspope/r2vcftools documentation built on Oct. 10, 2019, 2:06 a.m.