Relatedness: Relatedness calculation from VCF file
In nspope/r2vcftools: An R interface for vcftools
Description
Given a "vcfLink" object, returns a data frame containing pairwise relatedness coefficients between samples.
Usage
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Relatedness(object, ...)
## S4 method for signature 'vcfLink'
Relatedness(object, type = c("yang", "manichaikul"),
verbose = TRUE)
Arguments
object
an object of class "vcfLink"
type
the type of relatedness coefficient to return; see vcftools manual
verbose
print stdout from vcftools?
nspope/r2vcftools documentation built on Oct. 10, 2019, 2:06 a.m.
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Description
Given a "vcfLink" object, returns a data frame containing pairwise relatedness coefficients between samples.
Usage
1 2 3 4 5 | Relatedness(object, ...)
## S4 method for signature 'vcfLink'
Relatedness(object, type = c("yang", "manichaikul"),
verbose = TRUE)
|
Arguments
object |
an object of class "vcfLink" |
type |
the type of relatedness coefficient to return; see vcftools manual |
verbose |
print stdout from vcftools? |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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