Subset: Subset VCF files

In nspope/r2vcftools: An R interface for vcftools

Description

Given a "vcfLink" object, subsets loci/samples to a given vector of sample or site IDs.

Usage

Subset(object, ...)

## S4 method for signature 'vcfLink'
Subset(object, samples = NULL, sites = NULL,
  verbose = TRUE)

Arguments

object	an object of class "vcfLink"
samples	a character vector containing either positions or names of samples to keep
verbose	print stdout from vcftools?
site	a character vector containing either positions or names of sites to keep

nspope/r2vcftools documentation built on Oct. 10, 2019, 2:06 a.m.