Query: Query attributes of a VCF file

In nspope/r2vcftools: An R interface for vcftools

Description

Use vcftools to extract information from a VCF file.

Usage

Query(object, ...)

## S4 method for signature 'vcfLink'
Query(object, type = c("counts2", "freq2", "site-depth",
  "site-mean-depth", "geno-depth", "depth", "site-quality", "het", "hardy",
  "site-pi"), verbose = TRUE)

Arguments

object	an object of class "vcfLink"
type	the type of information to return; see the vcftools manual for details
verbose	boolean; if true, return stdout from vcftools

nspope/r2vcftools documentation built on Oct. 10, 2019, 2:06 a.m.