get.collectmetrics.report: get.collectmetrics.report
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
Usage
Arguments
Details
Value
Description
Creates a data frame using picard.collectmultiplemetrics()
Usage
1
get.collectmetrics.report(bam.dir, collectmetrics.idx=".alignment_summary_metrics$")
Arguments
bam.dir
Path to directory with bam files
collectmetric.idx
Index of files (default=".alignment_summary_metrics$")
Details
Creates a data frame using the txt file, the output of picard.collectmultiplemetrics().
Value
data frame of result summary
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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Description Usage Arguments Details Value
Description
Creates a data frame using picard.collectmultiplemetrics()
Usage
1 | get.collectmetrics.report(bam.dir, collectmetrics.idx=".alignment_summary_metrics$")
|
Arguments
bam.dir |
Path to directory with bam files |
collectmetric.idx |
Index of files (default=".alignment_summary_metrics$") |
Details
Creates a data frame using the txt file, the output of picard.collectmultiplemetrics().
Value
data frame of result summary
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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