get.single_end.metrics.report: get.single.end.metrics.report
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
Usage
Arguments
Details
Value
Description
Creates a data frame using picard.collectmultiplemetrics()
Usage
1
get.single_end.metrics.report(sam.dir, collectmetrics.idx=".alignment_summary_metrics$")
Arguments
sam.dir
Path to directory with sam files
collectmetric.idx
Index of file (default=".alignment_summary_metrics$")
Details
Creates a data frame using the txt file, the output of picard.collectmultiplemetrics(). Used for Single-end data(ex. miRSEQ).
Value
data frame of the result summary
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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Description Usage Arguments Details Value
Description
Creates a data frame using picard.collectmultiplemetrics()
Usage
1 | get.single_end.metrics.report(sam.dir, collectmetrics.idx=".alignment_summary_metrics$")
|
Arguments
sam.dir |
Path to directory with sam files |
collectmetric.idx |
Index of file (default=".alignment_summary_metrics$") |
Details
Creates a data frame using the txt file, the output of picard.collectmultiplemetrics(). Used for Single-end data(ex. miRSEQ).
Value
data frame of the result summary
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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