API for omicsCore/SEQprocess
SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.

Global functions
MuSE.call Man page
MuSE.sump Man page
Muse.tabix2.vcf Man page
SEQprocess Man page
STAR Man page
bowtie2 Man page
build.star.idx Man page
bwa Man page
cufflinks Man page
cutadapt Man page
eset2SE Man page
fastQC Man page
gatk.baserecalibrator Man page
gatk.combinevariants Man page
gatk.depthOFcoverage Man page
gatk.haplotypecaller Man page
gatk.mutect2.normal Man page
gatk.printreads Man page
gatk.realign Man page
gatk.targetcreator Man page
gatk.variantfilter Man page
generate.GC Man page
get.Robject.report Man page
get.annovar.report Man page
get.collectmetrics.report Man page
get.fns Man page
get.proc.report Man page
get.process.names Man page
get.qc.report Man page
get.single_end.metrics.report Man page
get.tophat.report Man page
get.trim.gal.report Man page
get.trim_cut.report Man page
gff2gr Man page
gtf2gr Man page
htseq.add.info Man page
htseq_count Man page
make.cset Man page
make.eset Man page
make.vset Man page
multiple.reads.pileup Man page
mut.type.somatic Man page
mutect2 Man page
picard.addrg Man page
picard.collectmetrics Man page
picard.reorder Man page
picard.rmdu Man page
pileup2seqz Man page
ploidyNcellularity Man page
print_message Man page
processSomatic Man page
qc_aggregate Man page
read.pileup.gz Man page
refGene2gr Man page
report Man page
seqz2rda Man page
seqz2seg Man page
somaticsniper Man page
tabix.vcf Man page
table.annovar Man page
tophat2 Man page
trim.gal Man page
varscan Man page
vcf2annovar Man page
vcf2gz Man page
vep Man page
vset.preprocess Man page
omicsCore/SEQprocess documentation built on May 9, 2019, 8:09 p.m.