seqz2seg: seqz2seg
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
Usage
Arguments
Details
References
See Also
Description
Segmentation to estimate DNA copy number variation.
Usage
1
Arguments
cnv.dir
Output directory
window
A parameter value for -w in sequenza. Indicate a window size (in bases), to be used for the binning.
Details
Normalization of depth ratio and DNA segmentation
References
Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.
See Also
https://cran.r-project.org/web/packages/sequenza/vignettes/sequenza.pdf
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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Description Usage Arguments Details References See Also
Description
Segmentation to estimate DNA copy number variation.
Usage
1 |
Arguments
cnv.dir |
Output directory |
window |
A parameter value for -w in sequenza. Indicate a window size (in bases), to be used for the binning. |
Details
Normalization of depth ratio and DNA segmentation
References
Sequenza: allele-specific copy number and mutation profiles from tumor sequencing data.
See Also
https://cran.r-project.org/web/packages/sequenza/vignettes/sequenza.pdf
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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