get.proc.report: get.proc.report
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
Usage
Arguments
Details
Description
Writes report accoding to process
Usage
1
get.proc.report(proc=c("qc", "trim","cutadapt", "bwa-mem", "bwa-aln", "tophat2","star","bowtie2","rmdu","rmdu_b", "realign", "gatk", "varscan2","mutect","muse","somaticsniper","annot","vep", "cufflinks","htseq","make.eSet"),output.dir)
Arguments
proc
Process name
output.dir
Output directory
Details
Creates report information according to processing result
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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Description Usage Arguments Details
Description
Writes report accoding to process
Usage
1 | get.proc.report(proc=c("qc", "trim","cutadapt", "bwa-mem", "bwa-aln", "tophat2","star","bowtie2","rmdu","rmdu_b", "realign", "gatk", "varscan2","mutect","muse","somaticsniper","annot","vep", "cufflinks","htseq","make.eSet"),output.dir)
|
Arguments
proc |
Process name |
output.dir |
Output directory |
Details
Creates report information according to processing result
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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