htseq.add.info: htseq.add.info

In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.

Description

Add information to the htseq output file

Usage

htseq.add.info(RNAtype="mRNA", count.fns, output.dir, output.dir, mc.cores=1)

Arguments

RNAtype	RNAtype (default="mRNA")
output.dir	Directory stored at FPKM conunt files
mc.cores	The number of cores to use. Must be at least one(default=1), and parallelization requires at least two cores.
fns.count	count file paths

Details

Adds information to the output file of htseq. (Gene name, chromosome, start position, end position, gene size, FPKM value)

omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.