make.vset: make.vset
In omicsCore/SEQprocess: SEQprocess : a modularized and customizable pipeline framework for NGS processing in R package.
Description
The mutations data are transformed to a file with extension .vSet
Usage
1
make.vset(annot.dir, Robject.dir, mc.cores = 1)
Arguments
annot.dir
ANNOVAR output directory
Robject.dir
Ouptut directory
mc.cores
The number of cores to use. Must be at least one(default=1), and parallelization requires at least two cores.
mut.cnt.cutoff
Depth filter
omicsCore/SEQprocess documentation built on May 7, 2020, 4:18 a.m.
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Description
The mutations data are transformed to a file with extension .vSet
Usage
1 | make.vset(annot.dir, Robject.dir, mc.cores = 1)
|
Arguments
annot.dir |
ANNOVAR output directory |
Robject.dir |
Ouptut directory |
mc.cores |
The number of cores to use. Must be at least one(default=1), and parallelization requires at least two cores. |
mut.cnt.cutoff |
Depth filter |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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