GOIDsInLevel: GOIDsInLevel

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

GOIDsInLevel

Description

This function extends getGOLevel returning only GO identifiers appearing between GO ancestors of at least one GeneList

Usage

GOIDsInLevel(
  GOLev,
  onto,
  geneList1 = NULL,
  geneList2 = NULL,
  orgPackage = NULL,
  restricted = TRUE
)

Arguments

GOLev	An integer
onto	string describing the ontology. Belongs to c('BP', 'MF', 'CC', 'ANY')
geneList1	character vector containing a FIRST gene list of entrez IDs
geneList2	character vector containing a SECOND gene list of entrez IDs
orgPackage	A string wih the name of the annotation package
restricted	Boolean variable to decide how tabulation is performed.

Value

GO identifiers appearing between GO ancestors of at least one GeneList

pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.