enrichOnto: enrichOnto

In pablof1988/goSorensen: Statistical inference based on the Sorensen-Dice dissimilarity and the Gene Ontology (GO)

enrichOnto

Description

This function performs standard tests of enrichment from a gene list

Usage

enrichOnto(
  geneList,
  geneUniverse,
  orgPackage = "org.Hs.eg.db",
  onto = c("BP", "MF", "CC"),
  pAdjustMeth = "BH",
  pvalCutoff = 0.01,
  qvalCutoff = 0.05
)

Arguments

geneList	character vector containing a FIRST gene list of entrez IDs
geneUniverse	character vector containing all genes from where geneLists have been extracted
orgPackage	A string wih the name of the annotation package
onto	string describing the ontology. Belongs to c('BP', 'MF', 'CC', 'ANY')
pAdjustMeth	string describing the adjust method. Belongs to c('BH', 'BY', 'Bonf')
pvalCutoff	A numeric value
qvalCutoff	A numeric value

Value

standard tests of enrichment from a gene list

pablof1988/goSorensen documentation built on July 21, 2023, 8:38 a.m.