modularity_event_sampling: Event sample method for resolution parameters of modularity...

In pengminshi/MRtree: Multi-resolution Reconciled Tree

Event sample method for resolution parameters of modularity clustering.

Description

Sampling the resolution parameter via Event Sampling algorithm proposed in Jeub, L. G., et al. (2018). 'Multiresolution consensus clustering in networks.' Scientific reports 8(1): 1-16.

Usage

modularity_event_sampling(
  A,
  n.res,
  gamma.min = NULL,
  gamma.max = NULL,
  subsample = 200
)

Arguments

A	n-by-n sample adjacency matrix
n.res	total number of resolution parameters to sample
gamma.min	lower bound for the range of resolution parameters to sample from
gamma.max	upper bound for the range of resolution parameters to sample from
subsample	integer, number of sample used for deriving the resolutions via subsampling (default 200). This procedure is adopted to save computation especially when n is large.

Value

a vector of length n.res, sampled resolution parameters.

pengminshi/MRtree documentation built on March 6, 2023, 4:20 p.m.