This package is intended to transform extracted SWATH/DIA data from the OpenSWATH or other (e.g. Spectronaut) software into a format directly-usable by statistics packages (e.g. mapDIA, PECA, MSstats) while performing filtering, annotation and FDR assessment if necessary.

Analyzing SWATH/DIA data

How to extract SWATH/DIA data before using SWATH2stats with OpenSWATH can be found here:


SWATH2stats is a Bioconductor package. Go to to see all information related to installation. Importantly there exists both a release and development version.


Please feel free to comment and post issues or pull requests on github.


For the publication describing this package, see:


peterblattmann/SWATH2stats documentation built on July 2, 2023, 9:42 p.m.