README.md

SWATH2stats

This package is intended to transform extracted SWATH/DIA data from the OpenSWATH or other (e.g. Spectronaut) software into a format directly-usable by statistics packages (e.g. mapDIA, PECA, MSstats) while performing filtering, annotation and FDR assessment if necessary.

Analyzing SWATH/DIA data

How to extract SWATH/DIA data before using SWATH2stats with OpenSWATH can be found here: http://openswath.org

Usage

SWATH2stats is a Bioconductor package. Go to https://www.bioconductor.org/packages/release/bioc/html/SWATH2stats.html to see all information related to installation. Importantly there exists both a release and development version.

Contribution

Please feel free to comment and post issues or pull requests on github.

Publication

For the publication describing this package, see: https://doi.org/10.1371/journal.pone.0153160

References



peterblattmann/SWATH2stats documentation built on April 20, 2021, 12:02 p.m.