This functions selects the columns suggested to run a python script to change the data from peptide-level to transition-level.
A data frame containing SWATH data.
Option to indicate if Unimod Identifier should be replaced form ":"" to "_".
The necessary columns are selected and the run column is renamed to filename for the script. The intensities are taken from the column aggr_Peak_Area and therefore the Intensity column is not exported.
Returns a data frame in the appropriate format to be used by a custom python script stored in the scripts folder.
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