API for philliplab/MotifBinner
Bin reads by Motif
| Global functions | |
|---|---|
| add_snps | Man page Source code |
| align_sequences | Man page Source code |
| bin_by_name | Man page Source code |
| bin_file | Man page Source code |
| check_classification | Man page Source code |
| classify_absolute | Man page Source code |
| classify_bin | Man page Source code |
| classify_bin_infovar_balance | Man page Source code |
| classify_bin_most_frequent | Man page Source code |
| classify_bin_random | Man page Source code |
| clean_matches | Man page Source code |
| clean_seq_data | Man page Source code |
| compare_dists | Man page Source code |
| construct_consensus | Man page Source code |
| create_scenario_data | Man page Source code |
| dput_classified_binned_folder | Man page Source code |
| extract_motifs | Man page Source code |
| extract_motifs_iterative | Man page Source code |
| extract_motifs_par | Man page Source code |
| fast_stringDist | Man page Source code |
| file_to_consensus | Man page Source code |
| gen_and_contaminate_reads | Man page Source code |
| gen_error_profile | Man page Source code |
| gen_error_profile_uniform | Man page Source code |
| gen_pid_search_scenario | Man page Source code |
| gen_reads | Man page Source code |
| gen_seq | Man page Source code |
| get_mislabel_test_data | Man page Source code |
| get_test_settings | Man page Source code |
| list_unique_scenarios | Man page Source code |
| load_or_initialize_cache | Man page Source code |
| mostConsensusString | Man page Source code |
| muscle_par | Man page Source code |
| mutate_base | Man page Source code |
| process_all_bins | Source code |
| process_bin | Man page Source code |
| process_file | Man page Source code |
| randomize_ambig | Man page Source code |
| randomize_list | Man page Source code |
| read_classified_binned_file | Man page Source code |
| read_sequence_file | Man page Source code |
| remove_motifs | Man page Source code |
| run_all_tests | Man page Source code |
| run_test | Man page Source code |
| save_bin_report | Man page Source code |
| save_bin_results | Man page Source code |
| score_all_classifications | Man page Source code |
| score_classification | Man page Source code |
| score_consensus | Man page Source code |
| twoStepConsensusString | Man page Source code |
