inst/report_processed_seqs.md
In philliplab/MotifBinner: Bin reads by Motif
Arguments
x <- pb_dat
x$pb_out <- NULL
x$seqs <- NULL
print(x)
## $classification_technique
## [1] "absolute"
##
## $classification_params
## $classification_params$threshold
## [1] 0.01333333
##
## $classification_params$start_threshold
## [1] 0.02333333
##
## $classification_params$max_sequences
## [1] 100
##
##
## $alignment_technique
## [1] "muscle"
##
## $alignment_params
## list()
##
## $consensus_technique
## [1] "mostConsensusString"
##
## $consensus_params
## list()
##
## $remove_gaps
## [1] TRUE
Compute metrics
metrics <- NULL
i <- 1
for (i in seq_along(pb_out)){
print(i)
input_size <- length(pb_out[[i]]$src) + length(pb_out[[i]]$out)
output_size <- length(pb_out[[i]]$src)
out <- pb_out[[i]]$out
src <- pb_out[[i]]$src
dmat <- pb_out[[i]]$dmat
min_dist <- min(as.dist(dmat))
in_max_dist <- max(pb_out[[i]]$dmat)
out_dmat <- dmat[match(names(src), colnames(dmat)),
match(names(src), colnames(dmat))]
out_max_dist <- max(out_dmat)
min_out_dist <- min(as.dist(out_dmat))
if (is.null(pb_out[[i]]$alignment)){
gaps <- NA
pos_no_mismatch <- NA
pos_mismatch <- NA
total_mismatches <- NA
non_acgt <- NA
} else {
conMat <- consensusMatrix(pb_out[[i]]$alignment)
gaps <- sum(conMat[-(1:4),])
mismatches <- apply(conMat, 2, sum) - apply(conMat, 2, max)
pos_no_mismatch <- sum(mismatches==0)
pos_mismatch <- sum(mismatches!=0)
total_mismatches <- sum(mismatches)
non_acgt <- sum(consensusMatrix(DNAStringSet(pb_out[[i]]$consensus[[1]]))[-(1:4),])
}
metrics <- rbind(metrics,
data.frame(input_size = input_size,
output_size = output_size,
min_dist = min_dist,
in_max_dist = in_max_dist,
out_max_dist = out_max_dist,
min_out_dist = min_out_dist,
gaps = gaps,
pos_no_mismatch = pos_no_mismatch,
pos_mismatch = pos_mismatch,
total_mismatches = total_mismatches,
non_acgt))
}
## [1] 1
## [1] 2
## [1] 3
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 4
## [1] 5
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 6
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 7
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 8
## [1] 9
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 10
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 11
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 12
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 13
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 14
## [1] 15
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 16
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 22
## [1] 23
## [1] 24
## [1] 25
## [1] 26
## [1] 27
## [1] 28
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 29
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 30
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 31
## [1] 32
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 33
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 34
## [1] 35
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 36
## [1] 37
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 38
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 39
## [1] 40
## [1] 41
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 42
## [1] 43
## [1] 44
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 45
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 46
## [1] 47
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 48
## [1] 49
## [1] 50
## [1] 51
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 52
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 53
## [1] 54
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 55
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 56
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 57
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 58
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 59
## [1] 60
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 61
## [1] 62
## [1] 63
## [1] 64
## [1] 65
## [1] 66
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 67
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 68
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 69
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 70
## [1] 71
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 72
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 73
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 74
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 75
## [1] 76
## [1] 77
## [1] 78
## [1] 79
## [1] 80
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 81
## [1] 82
## [1] 83
## [1] 84
## [1] 85
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 86
## [1] 87
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 88
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 89
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 90
## [1] 91
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 92
## [1] 93
## [1] 94
## [1] 95
## [1] 96
## [1] 97
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 98
## [1] 99
## [1] 100
## [1] 101
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 102
## [1] 103
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 104
## [1] 105
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 106
## [1] 107
## [1] 108
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 109
## [1] 110
## [1] 111
## [1] 112
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 113
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 114
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 115
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 116
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 117
## [1] 118
## [1] 119
## [1] 120
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 121
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 122
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 123
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 124
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 125
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 126
## [1] 127
## [1] 128
## [1] 129
## [1] 130
## [1] 131
## [1] 132
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 133
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 134
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 135
## [1] 136
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 137
## [1] 138
## [1] 139
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 140
## [1] 141
## [1] 142
## [1] 143
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 144
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 145
## [1] 146
## [1] 147
## [1] 148
## [1] 149
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 150
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 151
## [1] 152
## [1] 153
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 154
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 155
## [1] 156
## [1] 157
## [1] 158
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 159
## [1] 160
## [1] 161
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 162
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 163
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 164
## [1] 165
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 166
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 167
## [1] 168
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 169
## [1] 170
## [1] 171
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 172
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 173
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 174
## [1] 175
## [1] 176
## [1] 177
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 178
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 179
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 180
## [1] 181
## [1] 182
## [1] 183
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 184
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 185
## [1] 186
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 187
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 188
## [1] 189
## [1] 190
## [1] 191
## [1] 192
## [1] 193
## [1] 194
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 195
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 196
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 197
## [1] 198
## [1] 199
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 200
## [1] 201
## [1] 202
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 203
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 204
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 205
## [1] 206
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 207
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 208
## [1] 209
## [1] 210
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 211
## [1] 212
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 213
## [1] 214
## [1] 215
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 216
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 217
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 218
## [1] 219
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 220
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 221
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 222
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 223
## [1] 224
## [1] 225
## [1] 226
## [1] 227
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 228
## [1] 229
## [1] 230
## [1] 231
## [1] 232
## [1] 233
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 234
## [1] 235
## [1] 236
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 237
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 238
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 239
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 240
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 241
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 242
## [1] 243
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 244
## [1] 245
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 246
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 247
## [1] 248
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 249
## [1] 250
## [1] 251
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 252
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 253
## [1] 254
## [1] 255
## [1] 256
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 257
## [1] 258
## [1] 259
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 260
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 261
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 262
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 263
## [1] 264
## [1] 265
## [1] 266
## [1] 267
## [1] 268
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 269
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 270
## [1] 271
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 272
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 273
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 274
## [1] 275
## [1] 276
## [1] 277
## [1] 278
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 279
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 280
## [1] 281
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 282
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 283
## [1] 284
## [1] 285
## [1] 286
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 287
## [1] 288
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 289
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 290
## [1] 291
## [1] 292
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 293
## [1] 294
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 295
## [1] 296
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 297
## [1] 298
## [1] 299
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 300
## [1] 301
## [1] 302
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 303
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 304
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 305
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 306
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 307
## [1] 308
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 309
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 310
## [1] 311
## [1] 312
## [1] 313
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 314
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 315
## [1] 316
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 317
## [1] 318
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 319
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 320
## [1] 321
## [1] 322
## [1] 323
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 324
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 325
## [1] 326
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 327
## [1] 328
## [1] 329
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 330
## [1] 331
## [1] 332
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 333
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 334
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 335
## [1] 336
## [1] 337
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 338
## [1] 339
## [1] 340
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 341
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 342
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 343
## [1] 344
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 345
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 346
## [1] 347
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 348
## [1] 349
## [1] 350
## [1] 351
## [1] 352
## [1] 353
## [1] 354
## [1] 355
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 356
## [1] 357
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 358
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 359
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 360
## [1] 361
## [1] 362
## [1] 363
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 364
## [1] 365
## [1] 366
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 367
## [1] 368
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 369
## [1] 370
## [1] 371
## [1] 372
## [1] 373
## [1] 374
## [1] 375
## [1] 376
## [1] 377
## [1] 378
## [1] 379
## [1] 380
## [1] 381
## [1] 382
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 383
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 384
## [1] 385
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 386
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 387
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 388
## [1] 389
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 390
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 391
## [1] 392
## [1] 393
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 394
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 395
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 396
## [1] 397
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 398
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 399
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 400
## [1] 401
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 402
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 403
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 404
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 405
## [1] 406
## [1] 407
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 408
## [1] 409
## [1] 410
## [1] 411
## [1] 412
## [1] 413
## [1] 414
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 415
## [1] 416
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 417
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 418
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 419
## [1] 420
## [1] 421
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 422
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 423
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 424
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 425
## [1] 426
## [1] 427
## [1] 428
## [1] 429
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 430
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 431
## [1] 432
## [1] 433
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 434
## [1] 435
## [1] 436
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 437
## [1] 438
## [1] 439
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 440
## [1] 441
## [1] 442
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 443
## [1] 444
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 445
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 446
## [1] 447
## [1] 448
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 449
## [1] 450
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 451
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 452
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 453
## [1] 454
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 455
## [1] 456
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 457
## [1] 458
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 459
## [1] 460
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 461
## [1] 462
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 463
## [1] 464
## [1] 465
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 466
## [1] 467
## [1] 468
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 469
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 470
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 471
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 472
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 473
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 474
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 475
## [1] 476
## [1] 477
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 478
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 479
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 480
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 481
## [1] 482
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 483
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 484
## [1] 485
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 486
## [1] 487
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 488
## [1] 489
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 490
## [1] 491
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 492
## [1] 493
## [1] 494
## [1] 495
## [1] 496
## [1] 497
## [1] 498
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 499
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 500
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 501
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 502
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 503
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 504
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 505
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 506
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 507
## [1] 508
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 509
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 510
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 511
## [1] 512
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 513
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 514
## [1] 515
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 516
## [1] 517
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 518
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 519
## [1] 520
## [1] 521
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 522
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 523
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 524
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 525
## [1] 526
## [1] 527
## [1] 528
## [1] 529
## [1] 530
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 531
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 532
## [1] 533
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 534
## [1] 535
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 536
## [1] 537
## [1] 538
## [1] 539
## [1] 540
## [1] 541
## [1] 542
## [1] 543
## [1] 544
## [1] 545
## [1] 546
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 547
## [1] 548
## [1] 549
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 550
## [1] 551
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 552
## [1] 553
## [1] 554
## [1] 555
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 556
## [1] 557
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 558
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 559
## [1] 560
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 561
## [1] 562
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 563
## [1] 564
## [1] 565
## [1] 566
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 567
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 568
## [1] 569
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 570
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 571
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 572
## [1] 573
## [1] 574
## [1] 575
## [1] 576
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 577
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 578
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 579
## [1] 580
## [1] 581
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 582
## [1] 583
## [1] 584
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 585
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 586
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 587
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 588
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 589
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 590
## [1] 591
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 592
## [1] 593
## [1] 594
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 595
## [1] 596
## [1] 597
## [1] 598
## [1] 599
## [1] 600
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 601
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 602
## [1] 603
## [1] 604
## [1] 605
## [1] 606
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 607
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 608
## [1] 609
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 610
## [1] 611
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 612
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 613
## [1] 614
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 615
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 616
## [1] 617
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 618
## [1] 619
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 620
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 621
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 622
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 623
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 624
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 625
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 626
## [1] 627
## [1] 628
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 629
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 630
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 631
## [1] 632
## [1] 633
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 634
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 635
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 636
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 637
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 638
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 639
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 640
## [1] 641
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 642
## [1] 643
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 644
## [1] 645
## [1] 646
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 647
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 648
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 649
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 650
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 651
## [1] 652
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 653
## [1] 654
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 655
## [1] 656
## [1] 657
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 658
## [1] 659
## [1] 660
## [1] 661
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 662
## [1] 663
## [1] 664
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 665
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 666
## [1] 667
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 668
## [1] 669
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 670
## [1] 671
## [1] 672
## [1] 673
## [1] 674
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 675
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 676
## [1] 677
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 678
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 679
## [1] 680
## [1] 681
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 682
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 683
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 684
## [1] 685
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 686
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 687
## [1] 688
## [1] 689
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 690
## [1] 691
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 692
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 693
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 694
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 695
## [1] 696
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 697
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 698
## [1] 699
## [1] 700
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 701
## [1] 702
## [1] 703
## [1] 704
## [1] 705
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 706
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 707
## [1] 708
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 709
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 710
## [1] 711
## [1] 712
## [1] 713
## [1] 714
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 715
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 716
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 717
## [1] 718
## [1] 719
## [1] 720
## [1] 721
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 722
## [1] 723
## [1] 724
## [1] 725
## [1] 726
## [1] 727
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 728
## [1] 729
## [1] 730
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 731
## [1] 732
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 733
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 734
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 735
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 736
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 737
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 738
## [1] 739
## [1] 740
## [1] 741
## [1] 742
## [1] 743
## [1] 744
## [1] 745
## [1] 746
## [1] 747
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 748
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 749
## [1] 750
## [1] 751
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 752
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 753
## [1] 754
## [1] 755
## [1] 756
## [1] 757
## [1] 758
## [1] 759
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 760
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 761
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 762
## [1] 763
## [1] 764
## [1] 765
## [1] 766
## [1] 767
## [1] 768
## [1] 769
## [1] 770
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 771
## [1] 772
## [1] 773
## [1] 774
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 775
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 776
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 777
## [1] 778
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 779
## [1] 780
## [1] 781
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 782
## [1] 783
## [1] 784
## [1] 785
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 786
## [1] 787
## [1] 788
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 789
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 790
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 791
## [1] 792
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 793
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 794
## [1] 795
## [1] 796
## [1] 797
## [1] 798
## [1] 799
## [1] 800
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 801
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 802
## [1] 803
## [1] 804
## [1] 805
## [1] 806
## [1] 807
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 808
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 809
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 810
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 811
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 812
## [1] 813
## [1] 814
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 815
## [1] 816
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 817
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 818
## [1] 819
## [1] 820
## [1] 821
## [1] 822
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 823
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 824
## [1] 825
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 826
## [1] 827
## [1] 828
## [1] 829
## [1] 830
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 831
## [1] 832
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 833
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 834
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 835
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 836
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 837
## [1] 838
## [1] 839
## [1] 840
## [1] 841
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 842
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 843
## [1] 844
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 845
## [1] 846
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 847
## [1] 848
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 849
## [1] 850
## [1] 851
## [1] 852
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 853
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 854
## [1] 855
## [1] 856
## [1] 857
## [1] 858
## [1] 859
## [1] 860
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 861
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 862
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 863
## [1] 864
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 865
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 866
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 867
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 868
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 869
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 870
## [1] 871
## [1] 872
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 873
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 874
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 875
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 876
## [1] 877
## [1] 878
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 879
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 880
## [1] 881
## [1] 882
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 883
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 884
## [1] 885
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 886
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 887
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 888
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 889
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 890
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 891
## [1] 892
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 893
## [1] 894
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 895
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 896
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 897
## [1] 898
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 899
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 900
## [1] 901
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 902
## [1] 903
## [1] 904
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 905
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 906
## [1] 907
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 908
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 909
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 910
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 911
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 912
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 913
## [1] 914
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 915
## [1] 916
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 917
## [1] 918
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 919
## [1] 920
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 921
## [1] 922
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 923
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 924
## [1] 925
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 926
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 927
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 928
## [1] 929
## [1] 930
## [1] 931
## [1] 932
## [1] 933
## [1] 934
## [1] 935
## [1] 936
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 937
## [1] 938
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 939
## [1] 940
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 941
## [1] 942
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 943
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 944
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 945
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 946
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 947
## [1] 948
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 949
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 950
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 951
## [1] 952
## [1] 953
## [1] 954
## [1] 955
## [1] 956
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 957
## [1] 958
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 959
## [1] 960
## [1] 961
## [1] 962
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 963
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 964
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 965
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 966
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 967
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 968
## [1] 969
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 970
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 971
## [1] 972
## [1] 973
## [1] 974
## [1] 975
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 976
## [1] 977
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 978
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 979
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 980
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 981
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 982
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 983
## [1] 984
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 985
## [1] 986
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 987
## [1] 988
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 989
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 990
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 991
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 992
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 993
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 994
## [1] 995
## [1] 996
## [1] 997
## [1] 998
Effects of outlier removal
Before and after bin sizes
hist(metrics$input_size)
hist(metrics$output_size)
Before and after bin distances
hist(metrics$in_max_dist)
hist(metrics$out_max_dist)
hist(metrics$min_out_dist)
hist(metrics$in_max_dist - metrics$out_max_dist)
Where are the small bins coming from?
plot(metrics$output_size ~ metrics$input_size)
abline(a=0, b=1)
small_bins <- subset(metrics, output_size < 6)
plot(jitter(small_bins$output_size) ~ jitter(small_bins$input_size))
abline(a=0, b=1)
Alignment step
Number of gaps inserted
hist(metrics$gaps)
kable(data.frame(num_gaps = as.numeric(names(table(metrics$gaps))),
num_alignments = as.numeric(table(metrics$gaps))))
| num_gaps| num_alignments|
|--------:|--------------:|
| 0| 359|
| 1| 76|
| 2| 26|
| 3| 8|
| 4| 5|
| 5| 2|
| 6| 2|
| 7| 2|
| 8| 1|
| 9| 2|
| 15| 2|
| 17| 1|
| 18| 1|
| 19| 1|
| 20| 1|
| 21| 1|
| 24| 1|
| 25| 1|
| 26| 1|
| 27| 1|
| 28| 1|
| 32| 1|
| 35| 2|
| 38| 1|
| 42| 1|
| 44| 1|
| 45| 2|
| 47| 1|
| 51| 2|
| 54| 1|
| 118| 1|
Number positions with mismatches in the alignment
hist(metrics$pos_no_mismatch)
hist(metrics$pos_mismatch)
Total number of mismatches
hist(metrics$total_mismatches)
NON-ACGT characters in consensus
hist(metrics$non_acgt)
kable(data.frame(num_non_acgt = as.numeric(names(table(metrics$non_acgt))),
num_con_seq = as.numeric(table(metrics$non_acgt))))
| num_non_acgt| num_con_seq|
|------------:|-----------:|
| 0| 326|
| 1| 74|
| 2| 42|
| 3| 19|
| 4| 17|
| 5| 14|
| 6| 9|
| 8| 2|
| 9| 1|
| 10| 1|
| 11| 1|
| 13| 2|
philliplab/MotifBinner documentation built on Sept. 2, 2020, 11:41 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Arguments
x <- pb_dat
x$pb_out <- NULL
x$seqs <- NULL
print(x)
## $classification_technique
## [1] "absolute"
##
## $classification_params
## $classification_params$threshold
## [1] 0.01333333
##
## $classification_params$start_threshold
## [1] 0.02333333
##
## $classification_params$max_sequences
## [1] 100
##
##
## $alignment_technique
## [1] "muscle"
##
## $alignment_params
## list()
##
## $consensus_technique
## [1] "mostConsensusString"
##
## $consensus_params
## list()
##
## $remove_gaps
## [1] TRUE
Compute metrics
metrics <- NULL
i <- 1
for (i in seq_along(pb_out)){
print(i)
input_size <- length(pb_out[[i]]$src) + length(pb_out[[i]]$out)
output_size <- length(pb_out[[i]]$src)
out <- pb_out[[i]]$out
src <- pb_out[[i]]$src
dmat <- pb_out[[i]]$dmat
min_dist <- min(as.dist(dmat))
in_max_dist <- max(pb_out[[i]]$dmat)
out_dmat <- dmat[match(names(src), colnames(dmat)),
match(names(src), colnames(dmat))]
out_max_dist <- max(out_dmat)
min_out_dist <- min(as.dist(out_dmat))
if (is.null(pb_out[[i]]$alignment)){
gaps <- NA
pos_no_mismatch <- NA
pos_mismatch <- NA
total_mismatches <- NA
non_acgt <- NA
} else {
conMat <- consensusMatrix(pb_out[[i]]$alignment)
gaps <- sum(conMat[-(1:4),])
mismatches <- apply(conMat, 2, sum) - apply(conMat, 2, max)
pos_no_mismatch <- sum(mismatches==0)
pos_mismatch <- sum(mismatches!=0)
total_mismatches <- sum(mismatches)
non_acgt <- sum(consensusMatrix(DNAStringSet(pb_out[[i]]$consensus[[1]]))[-(1:4),])
}
metrics <- rbind(metrics,
data.frame(input_size = input_size,
output_size = output_size,
min_dist = min_dist,
in_max_dist = in_max_dist,
out_max_dist = out_max_dist,
min_out_dist = min_out_dist,
gaps = gaps,
pos_no_mismatch = pos_no_mismatch,
pos_mismatch = pos_mismatch,
total_mismatches = total_mismatches,
non_acgt))
}
## [1] 1
## [1] 2
## [1] 3
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 4
## [1] 5
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 6
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 7
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 8
## [1] 9
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 10
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 11
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 12
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 13
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 14
## [1] 15
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 16
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 17
## [1] 18
## [1] 19
## [1] 20
## [1] 21
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 22
## [1] 23
## [1] 24
## [1] 25
## [1] 26
## [1] 27
## [1] 28
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 29
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 30
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 31
## [1] 32
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 33
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 34
## [1] 35
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 36
## [1] 37
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 38
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 39
## [1] 40
## [1] 41
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 42
## [1] 43
## [1] 44
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 45
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 46
## [1] 47
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 48
## [1] 49
## [1] 50
## [1] 51
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 52
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 53
## [1] 54
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 55
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 56
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 57
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 58
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 59
## [1] 60
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 61
## [1] 62
## [1] 63
## [1] 64
## [1] 65
## [1] 66
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 67
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 68
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 69
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 70
## [1] 71
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 72
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 73
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 74
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 75
## [1] 76
## [1] 77
## [1] 78
## [1] 79
## [1] 80
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 81
## [1] 82
## [1] 83
## [1] 84
## [1] 85
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 86
## [1] 87
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 88
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 89
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 90
## [1] 91
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 92
## [1] 93
## [1] 94
## [1] 95
## [1] 96
## [1] 97
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 98
## [1] 99
## [1] 100
## [1] 101
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 102
## [1] 103
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 104
## [1] 105
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 106
## [1] 107
## [1] 108
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 109
## [1] 110
## [1] 111
## [1] 112
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 113
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 114
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 115
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 116
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 117
## [1] 118
## [1] 119
## [1] 120
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 121
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 122
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 123
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 124
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 125
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 126
## [1] 127
## [1] 128
## [1] 129
## [1] 130
## [1] 131
## [1] 132
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 133
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 134
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 135
## [1] 136
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 137
## [1] 138
## [1] 139
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 140
## [1] 141
## [1] 142
## [1] 143
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 144
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 145
## [1] 146
## [1] 147
## [1] 148
## [1] 149
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 150
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 151
## [1] 152
## [1] 153
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 154
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 155
## [1] 156
## [1] 157
## [1] 158
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 159
## [1] 160
## [1] 161
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 162
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 163
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 164
## [1] 165
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 166
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 167
## [1] 168
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 169
## [1] 170
## [1] 171
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 172
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 173
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 174
## [1] 175
## [1] 176
## [1] 177
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 178
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 179
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 180
## [1] 181
## [1] 182
## [1] 183
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 184
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 185
## [1] 186
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 187
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 188
## [1] 189
## [1] 190
## [1] 191
## [1] 192
## [1] 193
## [1] 194
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 195
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 196
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 197
## [1] 198
## [1] 199
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 200
## [1] 201
## [1] 202
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 203
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 204
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 205
## [1] 206
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 207
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 208
## [1] 209
## [1] 210
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 211
## [1] 212
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 213
## [1] 214
## [1] 215
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 216
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 217
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 218
## [1] 219
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 220
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 221
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 222
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 223
## [1] 224
## [1] 225
## [1] 226
## [1] 227
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 228
## [1] 229
## [1] 230
## [1] 231
## [1] 232
## [1] 233
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 234
## [1] 235
## [1] 236
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 237
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 238
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 239
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 240
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 241
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 242
## [1] 243
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 244
## [1] 245
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 246
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 247
## [1] 248
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 249
## [1] 250
## [1] 251
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 252
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 253
## [1] 254
## [1] 255
## [1] 256
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 257
## [1] 258
## [1] 259
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 260
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 261
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 262
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 263
## [1] 264
## [1] 265
## [1] 266
## [1] 267
## [1] 268
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 269
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 270
## [1] 271
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 272
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 273
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 274
## [1] 275
## [1] 276
## [1] 277
## [1] 278
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 279
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 280
## [1] 281
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 282
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 283
## [1] 284
## [1] 285
## [1] 286
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 287
## [1] 288
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 289
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 290
## [1] 291
## [1] 292
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 293
## [1] 294
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 295
## [1] 296
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 297
## [1] 298
## [1] 299
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 300
## [1] 301
## [1] 302
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 303
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 304
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 305
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 306
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 307
## [1] 308
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 309
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 310
## [1] 311
## [1] 312
## [1] 313
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 314
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 315
## [1] 316
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 317
## [1] 318
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 319
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 320
## [1] 321
## [1] 322
## [1] 323
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 324
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 325
## [1] 326
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 327
## [1] 328
## [1] 329
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 330
## [1] 331
## [1] 332
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 333
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 334
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 335
## [1] 336
## [1] 337
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 338
## [1] 339
## [1] 340
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 341
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 342
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 343
## [1] 344
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 345
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 346
## [1] 347
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 348
## [1] 349
## [1] 350
## [1] 351
## [1] 352
## [1] 353
## [1] 354
## [1] 355
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 356
## [1] 357
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 358
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 359
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 360
## [1] 361
## [1] 362
## [1] 363
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 364
## [1] 365
## [1] 366
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 367
## [1] 368
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 369
## [1] 370
## [1] 371
## [1] 372
## [1] 373
## [1] 374
## [1] 375
## [1] 376
## [1] 377
## [1] 378
## [1] 379
## [1] 380
## [1] 381
## [1] 382
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 383
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 384
## [1] 385
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 386
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 387
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 388
## [1] 389
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 390
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 391
## [1] 392
## [1] 393
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 394
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 395
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 396
## [1] 397
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 398
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 399
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 400
## [1] 401
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 402
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 403
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 404
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 405
## [1] 406
## [1] 407
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 408
## [1] 409
## [1] 410
## [1] 411
## [1] 412
## [1] 413
## [1] 414
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 415
## [1] 416
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 417
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 418
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 419
## [1] 420
## [1] 421
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 422
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 423
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 424
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 425
## [1] 426
## [1] 427
## [1] 428
## [1] 429
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 430
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 431
## [1] 432
## [1] 433
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 434
## [1] 435
## [1] 436
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 437
## [1] 438
## [1] 439
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 440
## [1] 441
## [1] 442
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 443
## [1] 444
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 445
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 446
## [1] 447
## [1] 448
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 449
## [1] 450
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 451
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 452
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 453
## [1] 454
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 455
## [1] 456
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 457
## [1] 458
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 459
## [1] 460
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 461
## [1] 462
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 463
## [1] 464
## [1] 465
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 466
## [1] 467
## [1] 468
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 469
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 470
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 471
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 472
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 473
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 474
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 475
## [1] 476
## [1] 477
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 478
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 479
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 480
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 481
## [1] 482
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 483
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 484
## [1] 485
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 486
## [1] 487
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 488
## [1] 489
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 490
## [1] 491
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 492
## [1] 493
## [1] 494
## [1] 495
## [1] 496
## [1] 497
## [1] 498
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 499
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 500
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 501
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 502
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 503
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 504
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 505
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 506
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 507
## [1] 508
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 509
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 510
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 511
## [1] 512
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 513
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 514
## [1] 515
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 516
## [1] 517
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 518
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 519
## [1] 520
## [1] 521
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 522
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 523
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 524
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 525
## [1] 526
## [1] 527
## [1] 528
## [1] 529
## [1] 530
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 531
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 532
## [1] 533
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 534
## [1] 535
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 536
## [1] 537
## [1] 538
## [1] 539
## [1] 540
## [1] 541
## [1] 542
## [1] 543
## [1] 544
## [1] 545
## [1] 546
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 547
## [1] 548
## [1] 549
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 550
## [1] 551
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 552
## [1] 553
## [1] 554
## [1] 555
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 556
## [1] 557
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 558
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 559
## [1] 560
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 561
## [1] 562
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 563
## [1] 564
## [1] 565
## [1] 566
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 567
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 568
## [1] 569
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 570
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 571
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 572
## [1] 573
## [1] 574
## [1] 575
## [1] 576
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 577
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 578
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 579
## [1] 580
## [1] 581
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 582
## [1] 583
## [1] 584
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 585
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 586
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 587
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 588
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 589
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 590
## [1] 591
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 592
## [1] 593
## [1] 594
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 595
## [1] 596
## [1] 597
## [1] 598
## [1] 599
## [1] 600
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 601
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 602
## [1] 603
## [1] 604
## [1] 605
## [1] 606
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 607
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 608
## [1] 609
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 610
## [1] 611
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 612
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 613
## [1] 614
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 615
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 616
## [1] 617
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 618
## [1] 619
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 620
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 621
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 622
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 623
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 624
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 625
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 626
## [1] 627
## [1] 628
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 629
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 630
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 631
## [1] 632
## [1] 633
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 634
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 635
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 636
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 637
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 638
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 639
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 640
## [1] 641
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 642
## [1] 643
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 644
## [1] 645
## [1] 646
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 647
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 648
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 649
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 650
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 651
## [1] 652
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 653
## [1] 654
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 655
## [1] 656
## [1] 657
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 658
## [1] 659
## [1] 660
## [1] 661
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 662
## [1] 663
## [1] 664
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 665
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 666
## [1] 667
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 668
## [1] 669
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 670
## [1] 671
## [1] 672
## [1] 673
## [1] 674
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 675
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 676
## [1] 677
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 678
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 679
## [1] 680
## [1] 681
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 682
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 683
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 684
## [1] 685
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 686
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 687
## [1] 688
## [1] 689
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 690
## [1] 691
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 692
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 693
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 694
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 695
## [1] 696
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 697
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 698
## [1] 699
## [1] 700
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 701
## [1] 702
## [1] 703
## [1] 704
## [1] 705
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 706
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 707
## [1] 708
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 709
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 710
## [1] 711
## [1] 712
## [1] 713
## [1] 714
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 715
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 716
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 717
## [1] 718
## [1] 719
## [1] 720
## [1] 721
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 722
## [1] 723
## [1] 724
## [1] 725
## [1] 726
## [1] 727
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 728
## [1] 729
## [1] 730
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 731
## [1] 732
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 733
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 734
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 735
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 736
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 737
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 738
## [1] 739
## [1] 740
## [1] 741
## [1] 742
## [1] 743
## [1] 744
## [1] 745
## [1] 746
## [1] 747
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 748
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 749
## [1] 750
## [1] 751
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 752
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 753
## [1] 754
## [1] 755
## [1] 756
## [1] 757
## [1] 758
## [1] 759
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 760
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 761
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 762
## [1] 763
## [1] 764
## [1] 765
## [1] 766
## [1] 767
## [1] 768
## [1] 769
## [1] 770
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 771
## [1] 772
## [1] 773
## [1] 774
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 775
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 776
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 777
## [1] 778
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 779
## [1] 780
## [1] 781
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 782
## [1] 783
## [1] 784
## [1] 785
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 786
## [1] 787
## [1] 788
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 789
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 790
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 791
## [1] 792
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 793
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 794
## [1] 795
## [1] 796
## [1] 797
## [1] 798
## [1] 799
## [1] 800
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 801
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 802
## [1] 803
## [1] 804
## [1] 805
## [1] 806
## [1] 807
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 808
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 809
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 810
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 811
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 812
## [1] 813
## [1] 814
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 815
## [1] 816
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 817
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 818
## [1] 819
## [1] 820
## [1] 821
## [1] 822
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 823
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 824
## [1] 825
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 826
## [1] 827
## [1] 828
## [1] 829
## [1] 830
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 831
## [1] 832
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 833
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 834
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 835
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 836
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 837
## [1] 838
## [1] 839
## [1] 840
## [1] 841
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 842
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 843
## [1] 844
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 845
## [1] 846
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 847
## [1] 848
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 849
## [1] 850
## [1] 851
## [1] 852
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 853
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 854
## [1] 855
## [1] 856
## [1] 857
## [1] 858
## [1] 859
## [1] 860
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 861
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 862
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 863
## [1] 864
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 865
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 866
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 867
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 868
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 869
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 870
## [1] 871
## [1] 872
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 873
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 874
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 875
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 876
## [1] 877
## [1] 878
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 879
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 880
## [1] 881
## [1] 882
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 883
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 884
## [1] 885
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 886
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 887
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 888
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 889
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 890
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 891
## [1] 892
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 893
## [1] 894
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 895
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 896
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 897
## [1] 898
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 899
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 900
## [1] 901
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 902
## [1] 903
## [1] 904
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 905
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 906
## [1] 907
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 908
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 909
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 910
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 911
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 912
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 913
## [1] 914
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 915
## [1] 916
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 917
## [1] 918
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 919
## [1] 920
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 921
## [1] 922
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 923
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 924
## [1] 925
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 926
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 927
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 928
## [1] 929
## [1] 930
## [1] 931
## [1] 932
## [1] 933
## [1] 934
## [1] 935
## [1] 936
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 937
## [1] 938
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 939
## [1] 940
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 941
## [1] 942
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 943
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 944
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 945
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 946
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 947
## [1] 948
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 949
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 950
## Warning in max(out_dmat): no non-missing arguments to max; returning -Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 951
## [1] 952
## [1] 953
## [1] 954
## [1] 955
## [1] 956
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 957
## [1] 958
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 959
## [1] 960
## [1] 961
## [1] 962
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 963
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 964
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 965
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 966
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 967
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 968
## [1] 969
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 970
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 971
## [1] 972
## [1] 973
## [1] 974
## [1] 975
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 976
## [1] 977
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 978
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 979
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 980
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 981
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 982
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 983
## [1] 984
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 985
## [1] 986
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 987
## [1] 988
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 989
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 990
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 991
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 992
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 993
## Warning in min(as.dist(dmat)): no non-missing arguments to min; returning
## Inf
## Warning in min(as.dist(out_dmat)): no non-missing arguments to min;
## returning Inf
## [1] 994
## [1] 995
## [1] 996
## [1] 997
## [1] 998
Effects of outlier removal
Before and after bin sizes
hist(metrics$input_size)
hist(metrics$output_size)
Before and after bin distances
hist(metrics$in_max_dist)
hist(metrics$out_max_dist)
hist(metrics$min_out_dist)
hist(metrics$in_max_dist - metrics$out_max_dist)
Where are the small bins coming from?
plot(metrics$output_size ~ metrics$input_size)
abline(a=0, b=1)
small_bins <- subset(metrics, output_size < 6)
plot(jitter(small_bins$output_size) ~ jitter(small_bins$input_size))
abline(a=0, b=1)
Alignment step
Number of gaps inserted
hist(metrics$gaps)
kable(data.frame(num_gaps = as.numeric(names(table(metrics$gaps))),
num_alignments = as.numeric(table(metrics$gaps))))
| num_gaps| num_alignments| |--------:|--------------:| | 0| 359| | 1| 76| | 2| 26| | 3| 8| | 4| 5| | 5| 2| | 6| 2| | 7| 2| | 8| 1| | 9| 2| | 15| 2| | 17| 1| | 18| 1| | 19| 1| | 20| 1| | 21| 1| | 24| 1| | 25| 1| | 26| 1| | 27| 1| | 28| 1| | 32| 1| | 35| 2| | 38| 1| | 42| 1| | 44| 1| | 45| 2| | 47| 1| | 51| 2| | 54| 1| | 118| 1|
Number positions with mismatches in the alignment
hist(metrics$pos_no_mismatch)
hist(metrics$pos_mismatch)
Total number of mismatches
hist(metrics$total_mismatches)
NON-ACGT characters in consensus
hist(metrics$non_acgt)
kable(data.frame(num_non_acgt = as.numeric(names(table(metrics$non_acgt))),
num_con_seq = as.numeric(table(metrics$non_acgt))))
| num_non_acgt| num_con_seq| |------------:|-----------:| | 0| 326| | 1| 74| | 2| 42| | 3| 19| | 4| 17| | 5| 14| | 6| 9| | 8| 2| | 9| 1| | 10| 1| | 11| 1| | 13| 2|
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