Achaz.stats: Achaz statistic

Description Usage Arguments Value References Examples

Description

Achaz statistic

Usage

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## S4 method for signature 'GENOME'
Achaz.stats(object,new.populations=FALSE,new.outgroup=FALSE,subsites=FALSE)

Arguments

object

an object of class "GENOME"

new.populations

list of populations. default:FALSE

new.outgroup

outgroup vector. default:FALSE

subsites

"transitions": SNPs that are transitions.
"transversions": SNPs that are transversions.
"syn": synonymous sites.
"nonsyn": nonsynonymous sites.
"exon": SNPs in exon regions.
"intron": SNPs in intron regions.
"coding": SNPs in coding regions (CDS).
"utr": SNPs in UTR regions.
"gene": SNPs in genes.
default:FALSE

Value

returned value is a modified object of class "GENOME"

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The following Slots will be modified in the "GENOME" object
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Yach

Achaz Y statistic

References

Achaz G.,2008 Testing for neutrality in samples with sequencing errors. Genetics 179: 1409.

Examples

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# GENOME.class <- readData("\home\Alignments")
# GENOME.class
# GENOME.class <- Achaz.stats(GENOME.class)
# GENOME.class <- Achaz.stats(GENOME.class,list(1:7,8:12))
# show the result:
# [email protected]
 

pievos101/PopGenome documentation built on Nov. 25, 2018, 10:26 p.m.