set.outgroup-methods: Define an outgroup

In pievos101/PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Define an outgroup

Description

This generic function defines the outgroup by matching the specified vector against each region.

Usage

## S4 method for signature 'GENOME'
set.outgroup(object,new.outgroup=FALSE, diploid=FALSE)

Arguments

object	an object of class "GENOME"
new.outgroup	a vector of outgroup individuals
diploid	if diploid data is present

Examples

# GENOME.class <- readData("\home\Alignments")
# outgroup <- c("seq1","seq2")
# GENOME.class <- set.outgroup(GENOME.class,new.outgroup=outgroup)
# GENOME.class <- neutrality.stats(GENOME.class)

pievos101/PopGenome documentation built on May 23, 2024, 7:31 p.m.