get_gff_info | R Documentation |
This function extracts annotation information from a GTF/GFF file.
get_gff_info(object=FALSE,gff.file,chr,position,feature=FALSE,extract.gene.names=FALSE)
object |
object of class |
gff.file |
basepath of the GTF/GFF file |
chr |
the chromosome |
position |
reference positions or region id (when |
feature |
feature to search for in the gff-file. returns a list of positions |
extract.gene.names |
returns the gene names of the chromosome |
This function extracts annotation information from a GTF/GFF file.
# get_gff_info("Arabidopsis.gff",chr=1,200202)
# get_gff_info(GENOME.class,"Arabidopsis.gff",chr=1,position=3)
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