PopGplot: Smoothed line-plot for multiple populations

In pievos101/PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Smoothed line-plot for multiple populations

Description

This function plots values with smoothed lines using spline interpolation.

Usage

PopGplot(values,colors=FALSE,span=0.1,ylab="",xlab="",
	ylim=c(min(values,na.rm=TRUE),max(values,na.rm=TRUE)))

Arguments

values	the statistical values (matrix); columns=populations
colors	the colors for each population (character vector)
span	the degree of smoothing
ylab	a title for the y axis
xlab	a title for the x axis
ylim	ranges for the y axis

Examples

# GENOME.class <- readSNP("Arabidopsis",CHR=1)
# GENOME.class.slide <- sliding.window.transform(test,1000,1000)
# GENOME.class.slide <- diversity.stats(GENOME.class.slide)
# values <- [e-mail]
# PopGplot(values)

pievos101/PopGenome documentation built on May 23, 2024, 7:31 p.m.