set.populations-methods: Define populations

In pievos101/PopGenome: An Efficient Swiss Army Knife for Population Genomic Analyses

Define populations

Description

This generic function defines the populations.
Using this function obviates the need to specify the populations for each calculation separately.
The populations can be set differently for different PopGenome modules by applying the function between module calls.

Usage

## S4 method for signature 'GENOME'
set.populations(object,new.populations=FALSE, diploid=FALSE,
triploid=FALSE,tetraploid=FALSE)

Arguments

object	an object of class "GENOME"
new.populations	list of populations. default:FALSE
diploid	if diploid data is present
triploid	if triploid data is present
tetraploid	if tetraploid data is present

Examples

# GENOME.class <- readData("\home\Alignments")
# pop.1 <- c("seq1","seq2")
# pop.2 <- c("seq3","seq4","seq1")
# GENOME.class <- set.populations(GENOME.class,list(pop.1,pop.2))
# [e-mail]@populations2
# GENOME.class <- neutrality.stats(GENOME.class)

pievos101/PopGenome documentation built on Feb. 24, 2023, 7:11 a.m.