PopGenome | R Documentation |
R-package for Population genetic & genomic analyses
Index:
F_ST.stats Fixation index diversity.stats Diversities MKT McDonald & Kreitman test MS Coalescent simulations detail.stats Several misc. statistics linkage.stats Linkage disequilibrium neutrality.stats Neutrality statistics readData Reading alignments and calculating summary data readSNP Read data in .SNP format (e.g., from the 1001 Arabidopsis Genomes project) readVCF Read data in VCF format (e.g., from the 1000 human Genomes project) readHapMap Read data in HapMap format sliding.window.transform Sliding window transformation splitting.data Split data into subsites test.params Set parameters for coalescent simulations.
Bastian Pfeifer Maintainer: Bastian Pfeifer <Bastian.Pfeifer@uni-duesseldorf.de>
?readData readData
# GENOME.class <- readData("...\Alignments")
# GENOME.class <- neutrality.stats(GENOME.class)
# values <- get.neutrality(GENOME.class)
# GENOME.class <- F_ST.stats(GENOME.class,list(1:5,6:10))
# values <- get.F_ST(GENOME.class)
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