browseFlowHist: browseFlowHist

In plantarum/flowPloidy: Analyze flow cytometer data to determine sample ploidy

browseFlowHist

Description

Visually assess and correct histogram fits

Usage

browseFlowHist(flowList, debug = FALSE)

Arguments

flowList	either a FlowHist object, or a list of FlowHist objects
debug	boolean, turns on debugging messages

Details

Visually assess histogram fits, correcting initial values, and selecting model components.

This function will open a browser tab displaying the first FlowHist object from the argument flowList. Using the interface, the user can modify the starting values for the histogram peaks, select different debris model components, toggle the linearity option, select which peak to treat as the standard, and, if multiple standard sizes are available, select which one to apply.

See the "Getting Started" vignette for a tutorial introduction.

Value

Returns the list of FlowHist objects, updated by any changes made in the GUI.

Author(s)

Tyler Smith

Examples

library(flowPloidyData)
batch1 <- batchFlowHist(flowPloidyFiles(), channel = "FL3.INT.LIN")
## Not run: 
batch1 <- browseFlowHist(batch1)

## End(Not run)

plantarum/flowPloidy documentation built on March 25, 2023, 1:37 a.m.