resetFlowHist: Reset the values in a 'FlowHist' object

In plantarum/flowPloidy: Analyze flow cytometer data to determine sample ploidy

Reset the values in a FlowHist object

Description

NB: This function isn't required for normal use, and isn't exported for general use. It's provided as a convenience for anyone interested in tweaking model construction and associated parameters. Regular users don't need to do this!

Usage

resetFlowHist(fh, from = "peaks")

Arguments

fh	a FlowHist object.
from	character, the point in the FlowHist process to reset from (see details).

Details

This function provides a safe way to reset the values in a FlowHist object. This is important because changing something early in the process will require updating all the dependent values in the appropriate order.

The dependency relationships are:

gate <- peaks <- comps <- limits

Consequently, changing the gate requires updating peaks, comps and limits. Changing components only requires updating the limits. Updating limits implicitly updates the model and subsequent analysis (i.e., NLS, CV, counts and RCS).

In practice, this means that if you change the components, you should call resetFlowHist to update the dependencies. i.e., resetFlowHist(fh, from = "limits").

Value

the updated FlowHist object.

Author(s)

Tyler Smith

plantarum/flowPloidy documentation built on March 25, 2023, 1:37 a.m.