pro_edata: Protein-level Expression Data (e_data)

Description Format Source References

Description

A dataset containing the log2 median-normalized quantified mass spectra for 2,731 proteins (quantified from pep_edata) using Bayesian proteoform modeling (Webb-Robertson, 2014).

Format

A data.frame with 2,731 rows (proteins) and 12 columns (protein identifier and samples):

Reference

Reference protein name

Mock*

Three columns of mock samples

Infection*

Eight columns of infection samples

Source

See details of pmartRdata for relevant grant numbers.

References

Webb-Robertson BJ, Matzke MM, Datta S, Payne SH, Kang J, Bramer LM, Nicora CD, Shukla AK, Metz TO, Rodland KD, Smith RD, Tardiff MF, McDermott JE, Pounds JG, Waters KM (2014), Bayesian proteoform modeling improves protein quantification of global proteomic measurements. Molecular & Cellular Proteomics. doi: 10.1074/mcp.M113.030932.


pmartR/pmartRdata documentation built on Jan. 6, 2019, 4:05 a.m.