inputSample: Data from sample file
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis
Description
The data from Affymetrix microarray of western diet feed mouse (WD)
vs. low fat diet feed mouse (LF) were used as an example.
748 differential expressed genes were identified with
cutoff FDR<0.05 using limma R package.
Usage
1
Format
A data frame with 721 rows and 10 variables:
- entrezgene
entrez gene ID
- mgi_symbol
gene symbol
- AveExpr
average expression value of gene
- t
t value
- P.Value
p value
- adj.P.Val
adjusted p value
- B
B value
- log2FC
log fold change value
- ensembl_gene_id
ensembl gene ID
- KEGG_GeneID
KEGG gene ID
ppdragondw/Key2Enrich documentation built on May 29, 2019, 7:39 a.m.
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Description
The data from Affymetrix microarray of western diet feed mouse (WD) vs. low fat diet feed mouse (LF) were used as an example. 748 differential expressed genes were identified with cutoff FDR<0.05 using limma R package.
Usage
1 |
Format
A data frame with 721 rows and 10 variables:
- entrezgene
entrez gene ID
- mgi_symbol
gene symbol
- AveExpr
average expression value of gene
- t
t value
- P.Value
p value
- adj.P.Val
adjusted p value
- B
B value
- log2FC
log fold change value
- ensembl_gene_id
ensembl gene ID
- KEGG_GeneID
KEGG gene ID
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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