GO2Enrich: Perform Gene Ontology enrichment analysis

In ppdragondw/Key2Enrich: R package of gene set enrichment analysis

Description

Perform Gene Ontology enrichment analysis

Usage

GO2Enrich(geneIDs, inputSpecies, adjustMethod, filterValue, GOType, imgWidth,
  imgHeight)

Arguments

geneIDs	gene identifiers
inputSpecies	human, mouse, rat
adjustMethod	p.adjust.methods, c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none")
filterValue	must by numeric, value from 0 to 1
GOType	BP,MF,CC
imgWidth	the width of export file
imgHeight	the height of export file

Value

data in dataframe class with pValue, adjust pValue of significate Gene Ontology

Examples

data(inputSample)
inputSample<-as.data.frame(inputSample)

head(inputSample)
egoDF<-GO2Enrich(geneIDs= as.character(inputSample$entrezgene),
                 inputSpecies="mouse",
                 adjustMethod="fdr",
                 filterValue=0.05,
                 GOType="BP",
                 imgWidth=15,
                 imgHeight=20)

ppdragondw/Key2Enrich documentation built on May 29, 2019, 7:39 a.m.