parseEntry: parseEntry
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis
Description
Usage
Arguments
Value
Examples
Description
parseEntry
Usage
1
parseEntry(entry)
Arguments
entry
this entry
Value
a list of node value
Examples
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11
path<-system.file(package = "Key2Enrich")
xmlPath<-paste(path,"/extdata",sep="")
xmlFile<-paste(xmlPath,sep="","/hsa04012.xml")
r<-parseKGMLFile(xmlFile)
kegg.nodes <- lapply(r[childIsEntry(r)], parseEntry)
nodeDF<-data.frame(KEGG_GeneID="NA",type=NA,link=NA,graphicName=NA,
graphicType=NA,graphicX=NA,graphicY=NA,
graphicWidth=NA,graphicHeight=NA)
nodeDF<-parseList2Dataframe(kegg.nodes,nodeDF)
head(nodeDF)
ppdragondw/Key2Enrich documentation built on May 29, 2019, 7:39 a.m.
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Description Usage Arguments Value Examples
Description
parseEntry
Usage
1 | parseEntry(entry)
|
Arguments
entry |
this entry |
Value
a list of node value
Examples
1 2 3 4 5 6 7 8 9 10 11 | path<-system.file(package = "Key2Enrich")
xmlPath<-paste(path,"/extdata",sep="")
xmlFile<-paste(xmlPath,sep="","/hsa04012.xml")
r<-parseKGMLFile(xmlFile)
kegg.nodes <- lapply(r[childIsEntry(r)], parseEntry)
nodeDF<-data.frame(KEGG_GeneID="NA",type=NA,link=NA,graphicName=NA,
graphicType=NA,graphicX=NA,graphicY=NA,
graphicWidth=NA,graphicHeight=NA)
nodeDF<-parseList2Dataframe(kegg.nodes,nodeDF)
head(nodeDF)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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