sampleWith3IDs: Mapping input file with ID to symbol, entrez, ensembl IDs
In ppdragondw/Key2Enrich: R package of gene set enrichment analysis

Description Usage Arguments Value Examples

Mapping input file with ID to symbol, entrez, ensembl IDs

1	sampleWith3IDs(filename, IDColumn, logFCColumn, IDType, inputSpecies)

`filename`	input file in csv format
`IDColumn`	must be numberic,the column number of sample ID
`logFCColumn`	must be numberic, the column number of sample log fold change
`IDType`	Human: entrezgene, hgnc_symbol, ensembl_gene_id, Mouse: entrezgene, mgi_symbol, ensembl_gene_id, Rat: entrezgene, rgd_symbol, ensembl_gene_id
`inputSpecies`	human, mouse, rat

sample with entrez ID, symbol and ensembl ID

path<-system.file(package = "Key2Enrich")
filePath<-paste(path,"/extdata",sep="")
file<-paste(filePath,sep="","/sampleFile.csv")

thisSampleWith3IDs<-sampleWith3IDs(file,
                                   IDColumn=1,
                                   logFCColumn=2,
                                   IDType="mgi_symbol",
                                   inputSpecies="mouse")